Neither would be the drug of choice. If you have left over antibiotics, you shouldn't. You're supposed to take all of them when they are prescribed or you can make resistant bacteria. You wouldn't have a full course now and that would also make resistant bacteria. See a dentist.
If you have no other options except the Doxy and cipro than Doxycycline is much better then cipro.
However neither is drug of choice.
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